GVFVariant.Sample (HAPI FHIR - Core Library 0.7 API)

java.lang.Object
- ca.uhn.fhir.model.api.BaseElement
- - ca.uhn.fhir.model.api.BaseIdentifiableElement
  - - ca.uhn.fhir.model.dstu.resource.GVFVariant.Sample

All Implemented Interfaces:

ICompositeElement, IElement, IIdentifiableElement, IResourceBlock, ISupportsUndeclaredExtensions

Enclosing class:

GVFVariant
```
public static class GVFVariant.Sample
extends BaseIdentifiableElement
implements IResourceBlock
```
Block class for child element: GVFVariant.sample (Individual genotypic information)
Definition: Individual genotypic information

Constructor Summary

Constructors
Constructor and Description

GVFVariant.Sample()

Constructors
Constructor and Description
`GVFVariant.Sample()`

Method Summary

Methods
Modifier and Type	Method and Description
`StringDt`	`addGenotype()` Adds and returns a new value for genotype (Genotype of individuals)
`GVFVariant.Sample`	`addGenotype(String theString)` Adds a new value for genotype (Genotype of individuals)
`StringDt`	`addPhased()` Adds and returns a new value for phased (Phase status of the sequence)
`GVFVariant.Sample`	`addPhased(String theString)` Adds a new value for phased (Phase status of the sequence)
`IntegerDt`	`addVariantReads()` Adds and returns a new value for variantReads (Read number of the sequence)
`GVFVariant.Sample`	`addVariantReads(int theInteger)` Adds a new value for variantReads (Read number of the sequence)
`<T extends IElement> List<T>`	`getAllPopulatedChildElementsOfType(Class<T> theType)` Returns a list containing all child elements matching a given type
`List<StringDt>`	`getGenotype()` Gets the value(s) for genotype (Genotype of individuals).
`StringDt`	`getGenotypeFirstRep()` Gets the first repetition for genotype (Genotype of individuals), creating it if it does not already exist.
`List<StringDt>`	`getPhased()` Gets the value(s) for phased (Phase status of the sequence).
`StringDt`	`getPhasedFirstRep()` Gets the first repetition for phased (Phase status of the sequence), creating it if it does not already exist.
`IntegerDt`	`getTotalReads()` Gets the value(s) for totalReads (Total reads).
`List<IntegerDt>`	`getVariantReads()` Gets the value(s) for variantReads (Read number of the sequence).
`IntegerDt`	`getVariantReadsFirstRep()` Gets the first repetition for variantReads (Read number of the sequence), creating it if it does not already exist.
`CodeDt`	`getZygosity()` Gets the value(s) for zygosity (Zygosity).
`boolean`	`isEmpty()`
`GVFVariant.Sample`	`setGenotype(List<StringDt> theValue)` Sets the value(s) for genotype (Genotype of individuals)
`GVFVariant.Sample`	`setPhased(List<StringDt> theValue)` Sets the value(s) for phased (Phase status of the sequence)
`GVFVariant.Sample`	`setTotalReads(int theInteger)` Sets the value for totalReads (Total reads)
`GVFVariant.Sample`	`setTotalReads(IntegerDt theValue)` Sets the value(s) for totalReads (Total reads)
`GVFVariant.Sample`	`setVariantReads(List<IntegerDt> theValue)` Sets the value(s) for variantReads (Read number of the sequence)
`GVFVariant.Sample`	`setZygosity(CodeDt theValue)` Sets the value(s) for zygosity (Zygosity)
`GVFVariant.Sample`	`setZygosity(String theCode)` Sets the value for zygosity (Zygosity)

Methods inherited from class ca.uhn.fhir.model.api.BaseIdentifiableElement
getElementSpecificId, getId, setElementSpecificId, setId, setId

Methods inherited from class ca.uhn.fhir.model.api.BaseElement
addUndeclaredExtension, addUndeclaredExtension, addUndeclaredExtension, getAllUndeclaredExtensions, getUndeclaredExtensions, getUndeclaredExtensionsByUrl, getUndeclaredModifierExtensions, isBaseEmpty

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ca.uhn.fhir.model.api.IIdentifiableElement
getElementSpecificId, getId, setElementSpecificId, setId, setId

- Constructor Detail
  - GVFVariant.Sample
```
public GVFVariant.Sample()
```
- Method Detail
  - isEmpty
```
public boolean isEmpty()
```
    Specified by:
    
    isEmpty in interface IElement
  - getAllPopulatedChildElementsOfType
```
public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType)
```
    Description copied from interface: ICompositeElement
    
    Returns a list containing all child elements matching a given type
    
    Specified by:
    
    getAllPopulatedChildElementsOfType in interface ICompositeElement
    
    Parameters:
    theType - The type to match. If set to null, all child elements will be returned
  - getPhased
```
public List<StringDt> getPhased()
```
    Gets the value(s) for phased (Phase status of the sequence). creating it if it does not exist. Will not return null.
    Definition: Attribute describing the phasing of a sequence
  - setPhased
```
public GVFVariant.Sample setPhased(List<StringDt> theValue)
```
    Sets the value(s) for phased (Phase status of the sequence)
    Definition: Attribute describing the phasing of a sequence
  - addPhased
```
public StringDt addPhased()
```
    Adds and returns a new value for phased (Phase status of the sequence)
    Definition: Attribute describing the phasing of a sequence
  - getPhasedFirstRep
```
public StringDt getPhasedFirstRep()
```
    Gets the first repetition for phased (Phase status of the sequence), creating it if it does not already exist.
    Definition: Attribute describing the phasing of a sequence
  - addPhased
```
public GVFVariant.Sample addPhased(String theString)
```
    Adds a new value for phased (Phase status of the sequence)
    Definition: Attribute describing the phasing of a sequence
    
    Returns:
    Returns a reference to this object, to allow for simple chaining.
  - getGenotype
```
public List<StringDt> getGenotype()
```
    Gets the value(s) for genotype (Genotype of individuals). creating it if it does not exist. Will not return null.
    Definition: Genotypes of the individual
  - setGenotype
```
public GVFVariant.Sample setGenotype(List<StringDt> theValue)
```
    Sets the value(s) for genotype (Genotype of individuals)
    Definition: Genotypes of the individual
  - addGenotype
```
public StringDt addGenotype()
```
    Adds and returns a new value for genotype (Genotype of individuals)
    Definition: Genotypes of the individual
  - getGenotypeFirstRep
```
public StringDt getGenotypeFirstRep()
```
    Gets the first repetition for genotype (Genotype of individuals), creating it if it does not already exist.
    Definition: Genotypes of the individual
  - addGenotype
```
public GVFVariant.Sample addGenotype(String theString)
```
    Adds a new value for genotype (Genotype of individuals)
    Definition: Genotypes of the individual
    
    Returns:
    Returns a reference to this object, to allow for simple chaining.
  - getVariantReads
```
public List<IntegerDt> getVariantReads()
```
    Gets the value(s) for variantReads (Read number of the sequence). creating it if it does not exist. Will not return null.
    Definition: Renumber of the sequence
  - setVariantReads
```
public GVFVariant.Sample setVariantReads(List<IntegerDt> theValue)
```
    Sets the value(s) for variantReads (Read number of the sequence)
    Definition: Renumber of the sequence
  - addVariantReads
```
public IntegerDt addVariantReads()
```
    Adds and returns a new value for variantReads (Read number of the sequence)
    Definition: Renumber of the sequence
  - getVariantReadsFirstRep
```
public IntegerDt getVariantReadsFirstRep()
```
    Gets the first repetition for variantReads (Read number of the sequence), creating it if it does not already exist.
    Definition: Renumber of the sequence
  - addVariantReads
```
public GVFVariant.Sample addVariantReads(int theInteger)
```
    Adds a new value for variantReads (Read number of the sequence)
    Definition: Renumber of the sequence
    
    Returns:
    Returns a reference to this object, to allow for simple chaining.
  - getTotalReads
```
public IntegerDt getTotalReads()
```
    Gets the value(s) for totalReads (Total reads). creating it if it does not exist. Will not return null.
    Definition: Total reads of all sequence present in the sample
  - setTotalReads
```
public GVFVariant.Sample setTotalReads(IntegerDt theValue)
```
    Sets the value(s) for totalReads (Total reads)
    Definition: Total reads of all sequence present in the sample
  - setTotalReads
```
public GVFVariant.Sample setTotalReads(int theInteger)
```
    Sets the value for totalReads (Total reads)
    Definition: Total reads of all sequence present in the sample
  - getZygosity
```
public CodeDt getZygosity()
```
    Gets the value(s) for zygosity (Zygosity). creating it if it does not exist. Will not return null.
    Definition: Zygosity of the sequences
  - setZygosity
```
public GVFVariant.Sample setZygosity(CodeDt theValue)
```
    Sets the value(s) for zygosity (Zygosity)
    Definition: Zygosity of the sequences
  - setZygosity
```
public GVFVariant.Sample setZygosity(String theCode)
```
    Sets the value for zygosity (Zygosity)
    Definition: Zygosity of the sequences

Class GVFVariant.Sample

Constructor Summary

Method Summary

Methods inherited from class ca.uhn.fhir.model.api.BaseIdentifiableElement

Methods inherited from class ca.uhn.fhir.model.api.BaseElement

Methods inherited from class java.lang.Object

Methods inherited from interface ca.uhn.fhir.model.api.IIdentifiableElement

Constructor Detail

GVFVariant.Sample

Method Detail

isEmpty

getAllPopulatedChildElementsOfType

getPhased

setPhased

addPhased

getPhasedFirstRep

addPhased

getGenotype

setGenotype

addGenotype

getGenotypeFirstRep

addGenotype

getVariantReads

setVariantReads

addVariantReads

getVariantReadsFirstRep

addVariantReads

getTotalReads

setTotalReads

setTotalReads

getZygosity

setZygosity

setZygosity