ca.uhn.fhir.model.dstu.resource

Class GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest

java.lang.Object

ca.uhn.fhir.model.api.BaseElement

ca.uhn.fhir.model.api.BaseIdentifiableElement

ca.uhn.fhir.model.dstu.resource.GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest

All Implemented Interfaces:

ICompositeElement, IElement, IIdentifiableElement, IResourceBlock, ISupportsUndeclaredExtensions

Enclosing class:

GeneticAnalysis

public static class GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest
extends BaseIdentifiableElement
implements IResourceBlock

Block class for child element: GeneticAnalysis.dnaRegionAnalysisTestCoverage.dnaRegionOfInterest (DNA studied)

Definition: DNA studied

Constructor Summary

Constructors

Constructor and Description
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest()

Method Summary

Methods

Modifier and Type	Method and Description
<T extends IElement> List<T>	getAllPopulatedChildElementsOfType(Class<T> theType) Returns a list containing all child elements matching a given type
StringDt	getGenechipId() Gets the value(s) for genechipId (ID of the genechip).
StringDt	getGenechipManufacturerId() Gets the value(s) for genechipManufacturerId (ID of manufacturer of the genechip).
StringDt	getGenechipVersion() Gets the value(s) for genechipVersion (Version of the genechip).
StringDt	getGenomicReferenceSequenceIdentifier() Gets the value(s) for genomicReferenceSequenceIdentifier (Genomic reference sequence identifier).
StringDt	getReferenceNucleotide() Gets the value(s) for referenceNucleotide (Genotype of the region in reference genome).
IntegerDt	getRegionOfInterestStart() Gets the value(s) for regionOfInterestStart (Start position of the DNA region of interest).
IntegerDt	getRegionOfInterestStop() Gets the value(s) for regionOfInterestStop (End position of the DNA region of interest).
StringDt	getVariableNucleotide() Gets the value(s) for variableNucleotide (The patient's genotype in the region).
boolean	isEmpty()
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setGenechipId(String theString) Sets the value for genechipId (ID of the genechip)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setGenechipId(StringDt theValue) Sets the value(s) for genechipId (ID of the genechip)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setGenechipManufacturerId(String theString) Sets the value for genechipManufacturerId (ID of manufacturer of the genechip)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setGenechipManufacturerId(StringDt theValue) Sets the value(s) for genechipManufacturerId (ID of manufacturer of the genechip)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setGenechipVersion(String theString) Sets the value for genechipVersion (Version of the genechip)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setGenechipVersion(StringDt theValue) Sets the value(s) for genechipVersion (Version of the genechip)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setGenomicReferenceSequenceIdentifier(String theString) Sets the value for genomicReferenceSequenceIdentifier (Genomic reference sequence identifier)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setGenomicReferenceSequenceIdentifier(StringDt theValue) Sets the value(s) for genomicReferenceSequenceIdentifier (Genomic reference sequence identifier)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setReferenceNucleotide(String theString) Sets the value for referenceNucleotide (Genotype of the region in reference genome)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setReferenceNucleotide(StringDt theValue) Sets the value(s) for referenceNucleotide (Genotype of the region in reference genome)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setRegionOfInterestStart(int theInteger) Sets the value for regionOfInterestStart (Start position of the DNA region of interest)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setRegionOfInterestStart(IntegerDt theValue) Sets the value(s) for regionOfInterestStart (Start position of the DNA region of interest)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setRegionOfInterestStop(int theInteger) Sets the value for regionOfInterestStop (End position of the DNA region of interest)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setRegionOfInterestStop(IntegerDt theValue) Sets the value(s) for regionOfInterestStop (End position of the DNA region of interest)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setVariableNucleotide(String theString) Sets the value for variableNucleotide (The patient's genotype in the region)
GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest	setVariableNucleotide(StringDt theValue) Sets the value(s) for variableNucleotide (The patient's genotype in the region)

Methods inherited from class ca.uhn.fhir.model.api.BaseIdentifiableElement

getElementSpecificId, getId, setElementSpecificId, setId, setId

Methods inherited from class ca.uhn.fhir.model.api.BaseElement

addUndeclaredExtension, addUndeclaredExtension, addUndeclaredExtension, getAllUndeclaredExtensions, getUndeclaredExtensions, getUndeclaredExtensionsByUrl, getUndeclaredModifierExtensions, isBaseEmpty

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ca.uhn.fhir.model.api.IIdentifiableElement

getElementSpecificId, getId, setElementSpecificId, setId, setId

Constructor Detail

GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest()

Method Detail

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface IElement

getAllPopulatedChildElementsOfType

public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType)

Description copied from interface: ICompositeElement

Returns a list containing all child elements matching a given type

Specified by:

getAllPopulatedChildElementsOfType in interface ICompositeElement

Parameters:

theType - The type to match. If set to null, all child elements will be returned

getGenomicReferenceSequenceIdentifier

public StringDt getGenomicReferenceSequenceIdentifier()

Gets the value(s) for genomicReferenceSequenceIdentifier (Genomic reference sequence identifier). creating it if it does not exist. Will not return null.

Definition: Identifier of the sequence represented in NCBI genomic nucleotide RefSeq IDs with their version number

setGenomicReferenceSequenceIdentifier

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setGenomicReferenceSequenceIdentifier(StringDt theValue)

Sets the value(s) for genomicReferenceSequenceIdentifier (Genomic reference sequence identifier)

Definition: Identifier of the sequence represented in NCBI genomic nucleotide RefSeq IDs with their version number

setGenomicReferenceSequenceIdentifier

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setGenomicReferenceSequenceIdentifier(String theString)

Sets the value for genomicReferenceSequenceIdentifier (Genomic reference sequence identifier)

Definition: Identifier of the sequence represented in NCBI genomic nucleotide RefSeq IDs with their version number

getRegionOfInterestStart

public IntegerDt getRegionOfInterestStart()

Gets the value(s) for regionOfInterestStart (Start position of the DNA region of interest). creating it if it does not exist. Will not return null.

Definition: Start position of the DNA region of interest

setRegionOfInterestStart

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setRegionOfInterestStart(IntegerDt theValue)

Sets the value(s) for regionOfInterestStart (Start position of the DNA region of interest)

Definition: Start position of the DNA region of interest

setRegionOfInterestStart

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setRegionOfInterestStart(int theInteger)

Sets the value for regionOfInterestStart (Start position of the DNA region of interest)

Definition: Start position of the DNA region of interest

getRegionOfInterestStop

public IntegerDt getRegionOfInterestStop()

Gets the value(s) for regionOfInterestStop (End position of the DNA region of interest). creating it if it does not exist. Will not return null.

Definition: End position of the DNA region of interest

setRegionOfInterestStop

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setRegionOfInterestStop(IntegerDt theValue)

Sets the value(s) for regionOfInterestStop (End position of the DNA region of interest)

Definition: End position of the DNA region of interest

setRegionOfInterestStop

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setRegionOfInterestStop(int theInteger)

Sets the value for regionOfInterestStop (End position of the DNA region of interest)

Definition: End position of the DNA region of interest

getReferenceNucleotide

public StringDt getReferenceNucleotide()

Gets the value(s) for referenceNucleotide (Genotype of the region in reference genome). creating it if it does not exist. Will not return null.

Definition: Genotype of the region in reference genome

setReferenceNucleotide

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setReferenceNucleotide(StringDt theValue)

Sets the value(s) for referenceNucleotide (Genotype of the region in reference genome)

Definition: Genotype of the region in reference genome

setReferenceNucleotide

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setReferenceNucleotide(String theString)

Sets the value for referenceNucleotide (Genotype of the region in reference genome)

Definition: Genotype of the region in reference genome

getVariableNucleotide

public StringDt getVariableNucleotide()

Gets the value(s) for variableNucleotide (The patient's genotype in the region). creating it if it does not exist. Will not return null.

Definition: The patient's genotype in the region

setVariableNucleotide

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setVariableNucleotide(StringDt theValue)

Sets the value(s) for variableNucleotide (The patient's genotype in the region)

Definition: The patient's genotype in the region

setVariableNucleotide

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setVariableNucleotide(String theString)

Sets the value for variableNucleotide (The patient's genotype in the region)

Definition: The patient's genotype in the region

getGenechipId

public StringDt getGenechipId()

Gets the value(s) for genechipId (ID of the genechip). creating it if it does not exist. Will not return null.

Definition: ID of the genechip

setGenechipId

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setGenechipId(StringDt theValue)

Sets the value(s) for genechipId (ID of the genechip)

Definition: ID of the genechip

setGenechipId

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setGenechipId(String theString)

Sets the value for genechipId (ID of the genechip)

Definition: ID of the genechip

getGenechipManufacturerId

public StringDt getGenechipManufacturerId()

Gets the value(s) for genechipManufacturerId (ID of manufacturer of the genechip). creating it if it does not exist. Will not return null.

Definition: ID of manufacturer of the genechip

setGenechipManufacturerId

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setGenechipManufacturerId(StringDt theValue)

Sets the value(s) for genechipManufacturerId (ID of manufacturer of the genechip)

Definition: ID of manufacturer of the genechip

setGenechipManufacturerId

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setGenechipManufacturerId(String theString)

Sets the value for genechipManufacturerId (ID of manufacturer of the genechip)

Definition: ID of manufacturer of the genechip

getGenechipVersion

public StringDt getGenechipVersion()

Gets the value(s) for genechipVersion (Version of the genechip). creating it if it does not exist. Will not return null.

Definition: Version of the genechip

setGenechipVersion

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setGenechipVersion(StringDt theValue)

Sets the value(s) for genechipVersion (Version of the genechip)

Definition: Version of the genechip

setGenechipVersion

public GeneticAnalysis.DnaRegionAnalysisTestCoverageDnaRegionOfInterest setGenechipVersion(String theString)

Sets the value for genechipVersion (Version of the genechip)

Definition: Version of the genechip