ca.uhn.fhir.model.dstu.resource

Class SequencingAnalysis

java.lang.Object

ca.uhn.fhir.model.api.BaseElement

ca.uhn.fhir.model.api.BaseResource

ca.uhn.fhir.model.dstu.resource.SequencingAnalysis

All Implemented Interfaces:

ICompositeElement, IElement, IResource, ISupportsUndeclaredExtensions

public class SequencingAnalysis
extends BaseResource
implements IResource

HAPI/FHIR SequencingAnalysis Resource (Sequencing Analysis)

Definition: Computational analysis on a patient's genetic raw file

Requirements:

Profile Definition: http://hl7.org/fhir/profiles/SequencingAnalysis

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	SequencingAnalysis.Genome Block class for child element: SequencingAnalysis.genome (Reference genome)

Field Summary

Fields

Modifier and Type	Field and Description
static DateClientParam	DATE Fluent Client search parameter constant for date
static StringClientParam	GENOME Fluent Client search parameter constant for genome
static Include	INCLUDE_SUBJECT Constant for fluent queries to be used to add include statements.
static String	SP_DATE Search parameter constant for date
static String	SP_GENOME Search parameter constant for genome
static String	SP_SUBJECT Search parameter constant for subject
static ReferenceClientParam	SUBJECT Fluent Client search parameter constant for subject

Fields inherited from class ca.uhn.fhir.model.api.BaseResource

SP_RES_ID, SP_RES_LANGUAGE

Constructor Summary

Constructors

Constructor and Description
SequencingAnalysis()

Method Summary

Methods

Modifier and Type	Method and Description
AttachmentDt	addFile() Adds and returns a new value for file (File)
ResourceReferenceDt	addInputAnalysis() Adds and returns a new value for inputAnalysis (Input analysis)
ResourceReferenceDt	addInputLab() Adds and returns a new value for inputLab (Input lab)
<T extends IElement> List<T>	getAllPopulatedChildElementsOfType(Class<T> theType) Returns a list containing all child elements matching a given type
DateDt	getDate() Gets the value(s) for date (Date).
List<AttachmentDt>	getFile() Gets the value(s) for file (File).
AttachmentDt	getFileFirstRep() Gets the first repetition for file (File), creating it if it does not already exist.
SequencingAnalysis.Genome	getGenome() Gets the value(s) for genome (Reference genome).
List<ResourceReferenceDt>	getInputAnalysis() Gets the value(s) for inputAnalysis (Input analysis).
List<ResourceReferenceDt>	getInputLab() Gets the value(s) for inputLab (Input lab).
StringDt	getName() Gets the value(s) for name (Name).
ResourceReferenceDt	getSubject() Gets the value(s) for subject (Subject).
boolean	isEmpty()
SequencingAnalysis	setDate(DateDt theValue) Sets the value(s) for date (Date)
SequencingAnalysis	setDate(Date theDate, TemporalPrecisionEnum thePrecision) Sets the value for date (Date)
SequencingAnalysis	setDateWithDayPrecision(Date theDate) Sets the value for date (Date)
SequencingAnalysis	setFile(List<AttachmentDt> theValue) Sets the value(s) for file (File)
SequencingAnalysis	setGenome(SequencingAnalysis.Genome theValue) Sets the value(s) for genome (Reference genome)
SequencingAnalysis	setInputAnalysis(List<ResourceReferenceDt> theValue) Sets the value(s) for inputAnalysis (Input analysis)
SequencingAnalysis	setInputLab(List<ResourceReferenceDt> theValue) Sets the value(s) for inputLab (Input lab)
SequencingAnalysis	setName(String theString) Sets the value for name (Name)
SequencingAnalysis	setName(StringDt theValue) Sets the value(s) for name (Name)
SequencingAnalysis	setSubject(ResourceReferenceDt theValue) Sets the value(s) for subject (Subject)

Methods inherited from class ca.uhn.fhir.model.api.BaseResource

getContained, getId, getLanguage, getResourceMetadata, getText, isBaseEmpty, setContained, setId, setId, setLanguage, setResourceMetadata, setText, toString

Methods inherited from class ca.uhn.fhir.model.api.BaseElement

addUndeclaredExtension, addUndeclaredExtension, addUndeclaredExtension, getAllUndeclaredExtensions, getUndeclaredExtensions, getUndeclaredExtensionsByUrl, getUndeclaredModifierExtensions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ca.uhn.fhir.model.api.IResource

getContained, getId, getLanguage, getResourceMetadata, getText, setId, setLanguage, setResourceMetadata

Field Detail

SP_SUBJECT

public static final String SP_SUBJECT

Search parameter constant for subject

Description: Subject of the analysis
Type: reference
Path: SequencingAnalysis.subject

See Also:

Constant Field Values

SUBJECT

public static final ReferenceClientParam SUBJECT

Fluent Client search parameter constant for subject

Description: Subject of the analysis
Type: reference
Path: SequencingAnalysis.subject

INCLUDE_SUBJECT

public static final Include INCLUDE_SUBJECT

Constant for fluent queries to be used to add include statements. Specifies the path value of "SequencingAnalysis.subject".

SP_DATE

public static final String SP_DATE

Search parameter constant for date

Description: Date when result of the analysis is updated
Type: date
Path: SequencingAnalysis.date

See Also:

Constant Field Values

DATE

public static final DateClientParam DATE

Fluent Client search parameter constant for date

Description: Date when result of the analysis is updated
Type: date
Path: SequencingAnalysis.date

SP_GENOME

public static final String SP_GENOME

Search parameter constant for genome

Description: Name of the reference genome used in the analysis
Type: string
Path: SequencingAnalysis.genome.name

See Also:

Constant Field Values

GENOME

public static final StringClientParam GENOME

Fluent Client search parameter constant for genome

Description: Name of the reference genome used in the analysis
Type: string
Path: SequencingAnalysis.genome.name

Constructor Detail

SequencingAnalysis

public SequencingAnalysis()

Method Detail

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface IElement

getAllPopulatedChildElementsOfType

public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType)

Description copied from interface: ICompositeElement

Returns a list containing all child elements matching a given type

Specified by:

getAllPopulatedChildElementsOfType in interface ICompositeElement

Parameters:

theType - The type to match. If set to null, all child elements will be returned

getSubject

public ResourceReferenceDt getSubject()

Gets the value(s) for subject (Subject). creating it if it does not exist. Will not return null.

Definition: Subject of the analysis

setSubject

public SequencingAnalysis setSubject(ResourceReferenceDt theValue)

Sets the value(s) for subject (Subject)

Definition: Subject of the analysis

getDate

public DateDt getDate()

Gets the value(s) for date (Date). creating it if it does not exist. Will not return null.

Definition: Date when result of the analysis is updated

setDate

public SequencingAnalysis setDate(DateDt theValue)

Sets the value(s) for date (Date)

Definition: Date when result of the analysis is updated

setDateWithDayPrecision

public SequencingAnalysis setDateWithDayPrecision(Date theDate)

Sets the value for date (Date)

Definition: Date when result of the analysis is updated

setDate

public SequencingAnalysis setDate(Date theDate,
                         TemporalPrecisionEnum thePrecision)

Sets the value for date (Date)

Definition: Date when result of the analysis is updated

getName

public StringDt getName()

Gets the value(s) for name (Name). creating it if it does not exist. Will not return null.

Definition: Name of the analysis

setName

public SequencingAnalysis setName(StringDt theValue)

Sets the value(s) for name (Name)

Definition: Name of the analysis

setName

public SequencingAnalysis setName(String theString)

Sets the value for name (Name)

Definition: Name of the analysis

getGenome

public SequencingAnalysis.Genome getGenome()

Gets the value(s) for genome (Reference genome). creating it if it does not exist. Will not return null.

Definition: Reference genome used in the analysis

setGenome

public SequencingAnalysis setGenome(SequencingAnalysis.Genome theValue)

Sets the value(s) for genome (Reference genome)

Definition: Reference genome used in the analysis

getFile

public List<AttachmentDt> getFile()

Gets the value(s) for file (File). creating it if it does not exist. Will not return null.

Definition: Files uploaded as result of the analysis

setFile

public SequencingAnalysis setFile(List<AttachmentDt> theValue)

Sets the value(s) for file (File)

Definition: Files uploaded as result of the analysis

addFile

public AttachmentDt addFile()

Adds and returns a new value for file (File)

Definition: Files uploaded as result of the analysis

getFileFirstRep

public AttachmentDt getFileFirstRep()

Gets the first repetition for file (File), creating it if it does not already exist.

Definition: Files uploaded as result of the analysis

getInputLab

public List<ResourceReferenceDt> getInputLab()

Gets the value(s) for inputLab (Input lab). creating it if it does not exist. Will not return null.

Definition: SequencingLab taken into account of the analysis

setInputLab

public SequencingAnalysis setInputLab(List<ResourceReferenceDt> theValue)

Sets the value(s) for inputLab (Input lab)

Definition: SequencingLab taken into account of the analysis

addInputLab

public ResourceReferenceDt addInputLab()

Adds and returns a new value for inputLab (Input lab)

Definition: SequencingLab taken into account of the analysis

getInputAnalysis

public List<ResourceReferenceDt> getInputAnalysis()

Gets the value(s) for inputAnalysis (Input analysis). creating it if it does not exist. Will not return null.

Definition: SequencingAnalysis taken into account of the analysis

setInputAnalysis

public SequencingAnalysis setInputAnalysis(List<ResourceReferenceDt> theValue)

Sets the value(s) for inputAnalysis (Input analysis)

Definition: SequencingAnalysis taken into account of the analysis

addInputAnalysis

public ResourceReferenceDt addInputAnalysis()

Adds and returns a new value for inputAnalysis (Input analysis)

Definition: SequencingAnalysis taken into account of the analysis