| Package | Description |
|---|---|
| ca.uhn.fhir.model.dstu.resource |
| Modifier and Type | Method and Description |
|---|---|
GVFMeta |
GVFMeta.addIndividual(String theString)
Adds a new value for individual (Id of individual being described in the file)
|
GVFMeta |
GVFMeta.setCaptureMethod(CodeDt theValue)
Sets the value(s) for captureMethod (Capture method)
|
GVFMeta |
GVFMeta.setCaptureMethod(String theCode)
Sets the value for captureMethod (Capture method)
|
GVFMeta |
GVFMeta.setCaptureRegions(String theUri)
Sets the value for captureRegions (Region captured in the file)
|
GVFMeta |
GVFMeta.setCaptureRegions(UriDt theValue)
Sets the value(s) for captureRegions (Region captured in the file)
|
GVFMeta |
GVFMeta.setFeatureGFF3(String theUri)
Sets the value for featureGFF3 (GFF3 file containing feature being described in the file)
|
GVFMeta |
GVFMeta.setFeatureGFF3(UriDt theValue)
Sets the value(s) for featureGFF3 (GFF3 file containing feature being described in the file)
|
GVFMeta |
GVFMeta.setFileDate(DateDt theValue)
Sets the value(s) for fileDate (Date when the file is updated)
|
GVFMeta |
GVFMeta.setFileDate(Date theDate,
TemporalPrecisionEnum thePrecision)
Sets the value for fileDate (Date when the file is updated)
|
GVFMeta |
GVFMeta.setFileDateWithDayPrecision(Date theDate)
Sets the value for fileDate (Date when the file is updated)
|
GVFMeta |
GVFMeta.setGenomicSource(CodeDt theValue)
Sets the value(s) for genomicSource (Source of the sample)
|
GVFMeta |
GVFMeta.setGenomicSource(String theCode)
Sets the value for genomicSource (Source of the sample)
|
GVFMeta |
GVFMeta.setGvfVersion(CodeDt theValue)
Sets the value(s) for gvfVersion (Version of the GVF file)
|
GVFMeta |
GVFMeta.setGvfVersion(String theCode)
Sets the value for gvfVersion (Version of the GVF file)
|
GVFMeta |
GVFMeta.setIndividual(List<StringDt> theValue)
Sets the value(s) for individual (Id of individual being described in the file)
|
GVFMeta |
GVFMeta.setPlatform(GVFMeta.Platform theValue)
Sets the value(s) for platform (Sequencing platform)
|
GVFMeta |
GVFMeta.setPopulation(CodeDt theValue)
Sets the value(s) for population (Code for population which the individual can be categorized into)
|
GVFMeta |
GVFMeta.setPopulation(String theCode)
Sets the value for population (Code for population which the individual can be categorized into)
|
GVFMeta |
GVFMeta.setReferenceFasta(String theUri)
Sets the value for referenceFasta (FASTA file used as reference assembly)
|
GVFMeta |
GVFMeta.setReferenceFasta(UriDt theValue)
Sets the value(s) for referenceFasta (FASTA file used as reference assembly)
|
GVFMeta |
GVFMeta.setSampleDescription(String theString)
Sets the value for sampleDescription (Description of sample used in the sequencing)
|
GVFMeta |
GVFMeta.setSampleDescription(StringDt theValue)
Sets the value(s) for sampleDescription (Description of sample used in the sequencing)
|
GVFMeta |
GVFMeta.setSequenceAlignment(String theString)
Sets the value for sequenceAlignment (Sequence alignment algorithm/pipline used)
|
GVFMeta |
GVFMeta.setSequenceAlignment(StringDt theValue)
Sets the value(s) for sequenceAlignment (Sequence alignment algorithm/pipline used)
|
GVFMeta |
GVFMeta.setSequencingScope(CodeDt theValue)
Sets the value(s) for sequencingScope (Sequencing scope)
|
GVFMeta |
GVFMeta.setSequencingScope(String theCode)
Sets the value for sequencingScope (Sequencing scope)
|
GVFMeta |
GVFMeta.setSourceFile(AttachmentDt theValue)
Sets the value(s) for sourceFile (Source GVF file)
|
GVFMeta |
GVFMeta.setSubject(List<GVFMeta.Subject> theValue)
Sets the value(s) for subject (Subject being described by the file)
|
GVFMeta |
GVFMeta.setVariantCalling(String theString)
Sets the value for variantCalling (Pipline used for variant calling)
|
GVFMeta |
GVFMeta.setVariantCalling(StringDt theValue)
Sets the value(s) for variantCalling (Pipline used for variant calling)
|
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