ca.uhn.fhir.model.dstu.resource

Class GeneExpression.RnaSeq

java.lang.Object

ca.uhn.fhir.model.api.BaseElement

ca.uhn.fhir.model.api.BaseIdentifiableElement

ca.uhn.fhir.model.dstu.resource.GeneExpression.RnaSeq

All Implemented Interfaces:

ICompositeElement, IElement, IIdentifiableElement, IResourceBlock, ISupportsUndeclaredExtensions

Enclosing class:

GeneExpression

public static class GeneExpression.RnaSeq
extends BaseIdentifiableElement
implements IResourceBlock

Block class for child element: GeneExpression.rnaSeq (RNA-Seq that studies the gene)

Definition: RNA-Seq that studies the gene

Constructor Summary

Constructors

Constructor and Description
GeneExpression.RnaSeq()

Method Summary

Methods

Modifier and Type	Method and Description
GeneExpression.RnaSeqIsoform	addIsoform() Adds and returns a new value for isoform (Isoform of the gene)
<T extends IElement> List<T>	getAllPopulatedChildElementsOfType(Class<T> theType) Returns a list containing all child elements matching a given type
DecimalDt	getExpression() Gets the value(s) for expression (Expression level of the gene in RPKM).
ResourceReferenceDt	getInputAnalysis() Gets the value(s) for inputAnalysis (Input analysis for the RNA-Seq).
ResourceReferenceDt	getInputLab() Gets the value(s) for inputLab (Input lab for the RNA-Seq).
List<GeneExpression.RnaSeqIsoform>	getIsoform() Gets the value(s) for isoform (Isoform of the gene).
GeneExpression.RnaSeqIsoform	getIsoformFirstRep() Gets the first repetition for isoform (Isoform of the gene), creating it if it does not already exist.
boolean	isEmpty()
GeneExpression.RnaSeq	setExpression(BigDecimal theValue) Sets the value for expression (Expression level of the gene in RPKM)
GeneExpression.RnaSeq	setExpression(DecimalDt theValue) Sets the value(s) for expression (Expression level of the gene in RPKM)
GeneExpression.RnaSeq	setExpression(double theValue) Sets the value for expression (Expression level of the gene in RPKM)
GeneExpression.RnaSeq	setExpression(long theValue) Sets the value for expression (Expression level of the gene in RPKM)
GeneExpression.RnaSeq	setInputAnalysis(ResourceReferenceDt theValue) Sets the value(s) for inputAnalysis (Input analysis for the RNA-Seq)
GeneExpression.RnaSeq	setInputLab(ResourceReferenceDt theValue) Sets the value(s) for inputLab (Input lab for the RNA-Seq)
GeneExpression.RnaSeq	setIsoform(List<GeneExpression.RnaSeqIsoform> theValue) Sets the value(s) for isoform (Isoform of the gene)

Methods inherited from class ca.uhn.fhir.model.api.BaseIdentifiableElement

getElementSpecificId, getId, setElementSpecificId, setId, setId

Methods inherited from class ca.uhn.fhir.model.api.BaseElement

addUndeclaredExtension, addUndeclaredExtension, addUndeclaredExtension, getAllUndeclaredExtensions, getUndeclaredExtensions, getUndeclaredExtensionsByUrl, getUndeclaredModifierExtensions, isBaseEmpty

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ca.uhn.fhir.model.api.IIdentifiableElement

getElementSpecificId, getId, setElementSpecificId, setId, setId

Constructor Detail

GeneExpression.RnaSeq

public GeneExpression.RnaSeq()

Method Detail

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface IElement

getAllPopulatedChildElementsOfType

public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType)

Description copied from interface: ICompositeElement

Returns a list containing all child elements matching a given type

Specified by:

getAllPopulatedChildElementsOfType in interface ICompositeElement

Parameters:

theType - The type to match. If set to null, all child elements will be returned

getInputLab

public ResourceReferenceDt getInputLab()

Gets the value(s) for inputLab (Input lab for the RNA-Seq). creating it if it does not exist. Will not return null.

Definition: Input lab for the RNA-Seq

setInputLab

public GeneExpression.RnaSeq setInputLab(ResourceReferenceDt theValue)

Sets the value(s) for inputLab (Input lab for the RNA-Seq)

Definition: Input lab for the RNA-Seq

getInputAnalysis

public ResourceReferenceDt getInputAnalysis()

Gets the value(s) for inputAnalysis (Input analysis for the RNA-Seq). creating it if it does not exist. Will not return null.

Definition: Input analysis for the RNA-Seq

setInputAnalysis

public GeneExpression.RnaSeq setInputAnalysis(ResourceReferenceDt theValue)

Sets the value(s) for inputAnalysis (Input analysis for the RNA-Seq)

Definition: Input analysis for the RNA-Seq

getExpression

public DecimalDt getExpression()

Gets the value(s) for expression (Expression level of the gene in RPKM). creating it if it does not exist. Will not return null.

Definition: Expression level of the gene in RPKM

setExpression

public GeneExpression.RnaSeq setExpression(DecimalDt theValue)

Sets the value(s) for expression (Expression level of the gene in RPKM)

Definition: Expression level of the gene in RPKM

setExpression

public GeneExpression.RnaSeq setExpression(long theValue)

Sets the value for expression (Expression level of the gene in RPKM)

Definition: Expression level of the gene in RPKM

setExpression

public GeneExpression.RnaSeq setExpression(double theValue)

Sets the value for expression (Expression level of the gene in RPKM)

Definition: Expression level of the gene in RPKM

setExpression

public GeneExpression.RnaSeq setExpression(BigDecimal theValue)

Sets the value for expression (Expression level of the gene in RPKM)

Definition: Expression level of the gene in RPKM

getIsoform

public List<GeneExpression.RnaSeqIsoform> getIsoform()

Gets the value(s) for isoform (Isoform of the gene). creating it if it does not exist. Will not return null.

Definition: Isoform of the gene

setIsoform

public GeneExpression.RnaSeq setIsoform(List<GeneExpression.RnaSeqIsoform> theValue)

Sets the value(s) for isoform (Isoform of the gene)

Definition: Isoform of the gene

addIsoform

public GeneExpression.RnaSeqIsoform addIsoform()

Adds and returns a new value for isoform (Isoform of the gene)

Definition: Isoform of the gene

getIsoformFirstRep

public GeneExpression.RnaSeqIsoform getIsoformFirstRep()

Gets the first repetition for isoform (Isoform of the gene), creating it if it does not already exist.

Definition: Isoform of the gene