ca.uhn.fhir.model.dstu.resource

Class GeneExpression

java.lang.Object

ca.uhn.fhir.model.api.BaseElement

ca.uhn.fhir.model.api.BaseResource

ca.uhn.fhir.model.dstu.resource.GeneExpression

All Implemented Interfaces:

ICompositeElement, IElement, IResource, ISupportsUndeclaredExtensions

public class GeneExpression
extends BaseResource
implements IResource

HAPI/FHIR GeneExpression Resource (Resource that records the patient's expression of a gene)

Definition: Resource that records the patient's expression of a gene

Requirements:

Profile Definition: http://hl7.org/fhir/profiles/GeneExpression

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	GeneExpression.Gene Block class for child element: GeneExpression.gene (Gene of study)
static class	GeneExpression.GeneCoordinate Block class for child element: GeneExpression.gene.coordinate (Coordinate of the gene)
static class	GeneExpression.RnaSeq Block class for child element: GeneExpression.rnaSeq (RNA-Seq that studies the gene)
static class	GeneExpression.RnaSeqIsoform Block class for child element: GeneExpression.rnaSeq.isoform (Isoform of the gene)

Field Summary

Fields

Modifier and Type	Field and Description
static StringClientParam	COORDINATE Fluent Client search parameter constant for coordinate
static StringClientParam	GENE Fluent Client search parameter constant for gene
static Include	INCLUDE_SUBJECT Constant for fluent queries to be used to add include statements.
static String	SP_COORDINATE Search parameter constant for coordinate
static String	SP_GENE Search parameter constant for gene
static String	SP_SUBJECT Search parameter constant for subject
static ReferenceClientParam	SUBJECT Fluent Client search parameter constant for subject

Fields inherited from class ca.uhn.fhir.model.api.BaseResource

SP_RES_ID, SP_RES_LANGUAGE

Constructor Summary

Constructors

Constructor and Description
GeneExpression()

Method Summary

Methods

Modifier and Type	Method and Description
ResourceReferenceDt	addMicroarray() Adds and returns a new value for microarray (Microarray that studies the gene)
GeneExpression.RnaSeq	addRnaSeq() Adds and returns a new value for rnaSeq (RNA-Seq that studies the gene)
<T extends IElement> List<T>	getAllPopulatedChildElementsOfType(Class<T> theType) Returns a list containing all child elements matching a given type
GeneExpression.Gene	getGene() Gets the value(s) for gene (Gene of study).
List<ResourceReferenceDt>	getMicroarray() Gets the value(s) for microarray (Microarray that studies the gene).
List<GeneExpression.RnaSeq>	getRnaSeq() Gets the value(s) for rnaSeq (RNA-Seq that studies the gene).
GeneExpression.RnaSeq	getRnaSeqFirstRep() Gets the first repetition for rnaSeq (RNA-Seq that studies the gene), creating it if it does not already exist.
ResourceReferenceDt	getSubject() Gets the value(s) for subject (Subject described by the resource).
boolean	isEmpty()
GeneExpression	setGene(GeneExpression.Gene theValue) Sets the value(s) for gene (Gene of study)
GeneExpression	setMicroarray(List<ResourceReferenceDt> theValue) Sets the value(s) for microarray (Microarray that studies the gene)
GeneExpression	setRnaSeq(List<GeneExpression.RnaSeq> theValue) Sets the value(s) for rnaSeq (RNA-Seq that studies the gene)
GeneExpression	setSubject(ResourceReferenceDt theValue) Sets the value(s) for subject (Subject described by the resource)

Methods inherited from class ca.uhn.fhir.model.api.BaseResource

getContained, getId, getLanguage, getResourceMetadata, getText, isBaseEmpty, setContained, setId, setId, setLanguage, setResourceMetadata, setText, toString

Methods inherited from class ca.uhn.fhir.model.api.BaseElement

addUndeclaredExtension, addUndeclaredExtension, addUndeclaredExtension, getAllUndeclaredExtensions, getUndeclaredExtensions, getUndeclaredExtensionsByUrl, getUndeclaredModifierExtensions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ca.uhn.fhir.model.api.IResource

getContained, getId, getLanguage, getResourceMetadata, getText, setId, setLanguage, setResourceMetadata

Field Detail

SP_SUBJECT

public static final String SP_SUBJECT

Search parameter constant for subject

Description: subject being described by the resource
Type: reference
Path: GeneExpression.subject

See Also:

Constant Field Values

SUBJECT

public static final ReferenceClientParam SUBJECT

Fluent Client search parameter constant for subject

Description: subject being described by the resource
Type: reference
Path: GeneExpression.subject

INCLUDE_SUBJECT

public static final Include INCLUDE_SUBJECT

Constant for fluent queries to be used to add include statements. Specifies the path value of "GeneExpression.subject".

SP_GENE

public static final String SP_GENE

Search parameter constant for gene

Description: Id of the gene
Type: string
Path: GeneExpression.gene.identifier

See Also:

Constant Field Values

GENE

public static final StringClientParam GENE

Fluent Client search parameter constant for gene

Description: Id of the gene
Type: string
Path: GeneExpression.gene.identifier

SP_COORDINATE

public static final String SP_COORDINATE

Search parameter constant for coordinate

Description: Coordinate of the gene
Type: string
Path: GeneExpression.gene.coordinate

See Also:

Constant Field Values

COORDINATE

public static final StringClientParam COORDINATE

Fluent Client search parameter constant for coordinate

Description: Coordinate of the gene
Type: string
Path: GeneExpression.gene.coordinate

Constructor Detail

GeneExpression

public GeneExpression()

Method Detail

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface IElement

getAllPopulatedChildElementsOfType

public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType)

Description copied from interface: ICompositeElement

Returns a list containing all child elements matching a given type

Specified by:

getAllPopulatedChildElementsOfType in interface ICompositeElement

Parameters:

theType - The type to match. If set to null, all child elements will be returned

getSubject

public ResourceReferenceDt getSubject()

Gets the value(s) for subject (Subject described by the resource). creating it if it does not exist. Will not return null.

Definition: Subject described by the resource

setSubject

public GeneExpression setSubject(ResourceReferenceDt theValue)

Sets the value(s) for subject (Subject described by the resource)

Definition: Subject described by the resource

getGene

public GeneExpression.Gene getGene()

Gets the value(s) for gene (Gene of study). creating it if it does not exist. Will not return null.

Definition: Gene of study

setGene

public GeneExpression setGene(GeneExpression.Gene theValue)

Sets the value(s) for gene (Gene of study)

Definition: Gene of study

getMicroarray

public List<ResourceReferenceDt> getMicroarray()

Gets the value(s) for microarray (Microarray that studies the gene). creating it if it does not exist. Will not return null.

Definition: Microarray that studies the gene

setMicroarray

public GeneExpression setMicroarray(List<ResourceReferenceDt> theValue)

Sets the value(s) for microarray (Microarray that studies the gene)

Definition: Microarray that studies the gene

addMicroarray

public ResourceReferenceDt addMicroarray()

Adds and returns a new value for microarray (Microarray that studies the gene)

Definition: Microarray that studies the gene

getRnaSeq

public List<GeneExpression.RnaSeq> getRnaSeq()

Gets the value(s) for rnaSeq (RNA-Seq that studies the gene). creating it if it does not exist. Will not return null.

Definition: RNA-Seq that studies the gene

setRnaSeq

public GeneExpression setRnaSeq(List<GeneExpression.RnaSeq> theValue)

Sets the value(s) for rnaSeq (RNA-Seq that studies the gene)

Definition: RNA-Seq that studies the gene

addRnaSeq

public GeneExpression.RnaSeq addRnaSeq()

Adds and returns a new value for rnaSeq (RNA-Seq that studies the gene)

Definition: RNA-Seq that studies the gene

getRnaSeqFirstRep

public GeneExpression.RnaSeq getRnaSeqFirstRep()

Gets the first repetition for rnaSeq (RNA-Seq that studies the gene), creating it if it does not already exist.

Definition: RNA-Seq that studies the gene