ca.uhn.fhir.model.dstu.resource

Class Microarray

java.lang.Object

ca.uhn.fhir.model.api.BaseElement

ca.uhn.fhir.model.api.BaseResource

ca.uhn.fhir.model.dstu.resource.Microarray

All Implemented Interfaces:

ICompositeElement, IElement, IResource, ISupportsUndeclaredExtensions

public class Microarray
extends BaseResource
implements IResource

HAPI/FHIR Microarray Resource (Microarray)

Definition: A resource that displays result of a microarray

Requirements:

Profile Definition: http://hl7.org/fhir/profiles/Microarray

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	Microarray.Sample Block class for child element: Microarray.sample (Sample)
static class	Microarray.SampleGene Block class for child element: Microarray.sample.gene (Gene of study)
static class	Microarray.SampleGeneCoordinate Block class for child element: Microarray.sample.gene.coordinate (Coordinate of the gene)
static class	Microarray.SampleSpecimen Block class for child element: Microarray.sample.specimen (Organism)
static class	Microarray.Scanner Block class for child element: Microarray.scanner (Scanner)
static class	Microarray.Subject Block class for child element: Microarray.subject (Subject of the microarray)

Field Summary

Fields

Modifier and Type	Field and Description
static StringClientParam	COORDINATE Fluent Client search parameter constant for coordinate
static StringClientParam	GENE Fluent Client search parameter constant for gene
static Include	INCLUDE_SUBJECT_PATIENT Constant for fluent queries to be used to add include statements.
static ReferenceClientParam	PATIENT Fluent Client search parameter constant for patient
static String	SP_COORDINATE Search parameter constant for coordinate
static String	SP_GENE Search parameter constant for gene
static String	SP_PATIENT Search parameter constant for patient

Fields inherited from class ca.uhn.fhir.model.api.BaseResource

SP_RES_ID, SP_RES_LANGUAGE

Constructor Summary

Constructors

Constructor and Description
Microarray()

Method Summary

Methods

Modifier and Type	Method and Description
Microarray.Sample	addSample() Adds and returns a new value for sample (Sample)
Microarray.Subject	addSubject() Adds and returns a new value for subject (Subject of the microarray)
<T extends IElement> List<T>	getAllPopulatedChildElementsOfType(Class<T> theType) Returns a list containing all child elements matching a given type
DateDt	getDate() Gets the value(s) for date (Date).
ResourceReferenceDt	getOrganization() Gets the value(s) for organization (Organization).
List<Microarray.Sample>	getSample() Gets the value(s) for sample (Sample).
Microarray.Sample	getSampleFirstRep() Gets the first repetition for sample (Sample), creating it if it does not already exist.
Microarray.Scanner	getScanner() Gets the value(s) for scanner (Scanner).
List<Microarray.Subject>	getSubject() Gets the value(s) for subject (Subject of the microarray).
Microarray.Subject	getSubjectFirstRep() Gets the first repetition for subject (Subject of the microarray), creating it if it does not already exist.
boolean	isEmpty()
Microarray	setDate(DateDt theValue) Sets the value(s) for date (Date)
Microarray	setDate(Date theDate, TemporalPrecisionEnum thePrecision) Sets the value for date (Date)
Microarray	setDateWithDayPrecision(Date theDate) Sets the value for date (Date)
Microarray	setOrganization(ResourceReferenceDt theValue) Sets the value(s) for organization (Organization)
Microarray	setSample(List<Microarray.Sample> theValue) Sets the value(s) for sample (Sample)
Microarray	setScanner(Microarray.Scanner theValue) Sets the value(s) for scanner (Scanner)
Microarray	setSubject(List<Microarray.Subject> theValue) Sets the value(s) for subject (Subject of the microarray)

Methods inherited from class ca.uhn.fhir.model.api.BaseResource

getContained, getId, getLanguage, getResourceMetadata, getText, isBaseEmpty, setContained, setId, setId, setLanguage, setResourceMetadata, setText, toString

Methods inherited from class ca.uhn.fhir.model.api.BaseElement

addUndeclaredExtension, addUndeclaredExtension, addUndeclaredExtension, getAllUndeclaredExtensions, getUndeclaredExtensions, getUndeclaredExtensionsByUrl, getUndeclaredModifierExtensions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ca.uhn.fhir.model.api.IResource

getContained, getId, getLanguage, getResourceMetadata, getText, setId, setLanguage, setResourceMetadata

Field Detail

SP_PATIENT

public static final String SP_PATIENT

Search parameter constant for patient

Description: Patient described by the microarray
Type: reference
Path: Microarray.subject.patient

See Also:

Constant Field Values

PATIENT

public static final ReferenceClientParam PATIENT

Fluent Client search parameter constant for patient

Description: Patient described by the microarray
Type: reference
Path: Microarray.subject.patient

INCLUDE_SUBJECT_PATIENT

public static final Include INCLUDE_SUBJECT_PATIENT

Constant for fluent queries to be used to add include statements. Specifies the path value of "Microarray.subject.patient".

SP_GENE

public static final String SP_GENE

Search parameter constant for gene

Description: Gene studied in the microarray
Type: string
Path: Microarray.sample.gene.identity

See Also:

Constant Field Values

GENE

public static final StringClientParam GENE

Fluent Client search parameter constant for gene

Description: Gene studied in the microarray
Type: string
Path: Microarray.sample.gene.identity

SP_COORDINATE

public static final String SP_COORDINATE

Search parameter constant for coordinate

Description: Coordinate of the gene
Type: string
Path: Microarray.sample.gene.coordinate

See Also:

Constant Field Values

COORDINATE

public static final StringClientParam COORDINATE

Fluent Client search parameter constant for coordinate

Description: Coordinate of the gene
Type: string
Path: Microarray.sample.gene.coordinate

Constructor Detail

Microarray

public Microarray()

Method Detail

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface IElement

getAllPopulatedChildElementsOfType

public <T extends IElement> List<T> getAllPopulatedChildElementsOfType(Class<T> theType)

Description copied from interface: ICompositeElement

Returns a list containing all child elements matching a given type

Specified by:

getAllPopulatedChildElementsOfType in interface ICompositeElement

Parameters:

theType - The type to match. If set to null, all child elements will be returned

getSubject

public List<Microarray.Subject> getSubject()

Gets the value(s) for subject (Subject of the microarray). creating it if it does not exist. Will not return null.

Definition: Subject of the microarray

setSubject

public Microarray setSubject(List<Microarray.Subject> theValue)

Sets the value(s) for subject (Subject of the microarray)

Definition: Subject of the microarray

addSubject

public Microarray.Subject addSubject()

Adds and returns a new value for subject (Subject of the microarray)

Definition: Subject of the microarray

getSubjectFirstRep

public Microarray.Subject getSubjectFirstRep()

Gets the first repetition for subject (Subject of the microarray), creating it if it does not already exist.

Definition: Subject of the microarray

getOrganization

public ResourceReferenceDt getOrganization()

Gets the value(s) for organization (Organization). creating it if it does not exist. Will not return null.

Definition: Organization that does the microarray

setOrganization

public Microarray setOrganization(ResourceReferenceDt theValue)

Sets the value(s) for organization (Organization)

Definition: Organization that does the microarray

getDate

public DateDt getDate()

Gets the value(s) for date (Date). creating it if it does not exist. Will not return null.

Definition: Date when result of the microarray is updated

setDate

public Microarray setDate(DateDt theValue)

Sets the value(s) for date (Date)

Definition: Date when result of the microarray is updated

setDateWithDayPrecision

public Microarray setDateWithDayPrecision(Date theDate)

Sets the value for date (Date)

Definition: Date when result of the microarray is updated

setDate

public Microarray setDate(Date theDate,
                 TemporalPrecisionEnum thePrecision)

Sets the value for date (Date)

Definition: Date when result of the microarray is updated

getScanner

public Microarray.Scanner getScanner()

Gets the value(s) for scanner (Scanner). creating it if it does not exist. Will not return null.

Definition: Scanner used in the microarray

setScanner

public Microarray setScanner(Microarray.Scanner theValue)

Sets the value(s) for scanner (Scanner)

Definition: Scanner used in the microarray

getSample

public List<Microarray.Sample> getSample()

Gets the value(s) for sample (Sample). creating it if it does not exist. Will not return null.

Definition: Sample of a grid on the chip

setSample

public Microarray setSample(List<Microarray.Sample> theValue)

Sets the value(s) for sample (Sample)

Definition: Sample of a grid on the chip

addSample

public Microarray.Sample addSample()

Adds and returns a new value for sample (Sample)

Definition: Sample of a grid on the chip

getSampleFirstRep

public Microarray.Sample getSampleFirstRep()

Gets the first repetition for sample (Sample), creating it if it does not already exist.

Definition: Sample of a grid on the chip