Uses of Class
ca.uhn.fhir.model.dstu.resource.GVFVariant

Packages that use GVFVariant

Package	Description
ca.uhn.fhir.model.dstu.resource

Uses of GVFVariant in ca.uhn.fhir.model.dstu.resource

Methods in ca.uhn.fhir.model.dstu.resource that return GVFVariant

Modifier and Type	Method and Description
GVFVariant	GVFVariant.addIndividual(String theString) Adds a new value for individual (Individuals being described)
GVFVariant	GVFVariant.addReferenceAA(String theString) Adds a new value for referenceAA (Amino acids that overlaps with the reference sequence)
GVFVariant	GVFVariant.addVariantAA(String theString) Adds a new value for variantAA (Amino acids that overlap with the features being described)
GVFVariant	GVFVariant.addVariantCodon(String theString) Adds a new value for variantCodon (Codons that overlap with feature being described)
GVFVariant	GVFVariant.addVariantFreq(BigDecimal theValue) Adds a new value for variantFreq (Variant frequency)
GVFVariant	GVFVariant.addVariantFreq(double theValue) Adds a new value for variantFreq (Variant frequency)
GVFVariant	GVFVariant.addVariantFreq(long theValue) Adds a new value for variantFreq (Variant frequency)
GVFVariant	GVFVariant.addVariantSeq(String theString) Adds a new value for variantSeq (Sequence presents in the variant)
GVFVariant	GVFVariant.setAlias(String theString) Sets the value for alias (Alias of the feature)
GVFVariant	GVFVariant.setAlias(StringDt theValue) Sets the value(s) for alias (Alias of the feature)
GVFVariant	GVFVariant.setBreakpointDetail(GVFVariant.BreakpointDetail theValue) Sets the value(s) for breakpointDetail (Coordinate of a variant with zero length)
GVFVariant	GVFVariant.setDbxref(GVFVariant.Dbxref theValue) Sets the value(s) for dbxref (Reference of the feature in a database)
GVFVariant	GVFVariant.setEnd(int theInteger) Sets the value for end (End position)
GVFVariant	GVFVariant.setEnd(IntegerDt theValue) Sets the value(s) for end (End position)
GVFVariant	GVFVariant.setEndRange(GVFVariant.EndRange theValue) Sets the value(s) for endRange (End range)
GVFVariant	GVFVariant.setFeatureId(String theString) Sets the value for featureId (Id of the feature)
GVFVariant	GVFVariant.setFeatureId(StringDt theValue) Sets the value(s) for featureId (Id of the feature)
GVFVariant	GVFVariant.setIndividual(List<StringDt> theValue) Sets the value(s) for individual (Individuals being described)
GVFVariant	GVFVariant.setMeta(ResourceReferenceDt theValue) Sets the value(s) for meta (GVF Meta)
GVFVariant	GVFVariant.setReferenceAA(List<StringDt> theValue) Sets the value(s) for referenceAA (Amino acids that overlaps with the reference sequence)
GVFVariant	GVFVariant.setReferenceCodon(String theString) Sets the value for referenceCodon (Codon that overlap with the reference sequence)
GVFVariant	GVFVariant.setReferenceCodon(StringDt theValue) Sets the value(s) for referenceCodon (Codon that overlap with the reference sequence)
GVFVariant	GVFVariant.setReferenceSeq(String theString) Sets the value for referenceSeq (Reference sequence)
GVFVariant	GVFVariant.setReferenceSeq(StringDt theValue) Sets the value(s) for referenceSeq (Reference sequence)
GVFVariant	GVFVariant.setSample(List<GVFVariant.Sample> theValue) Sets the value(s) for sample (Individual genotypic information)
GVFVariant	GVFVariant.setScore(int theInteger) Sets the value for score (Sequence score)
GVFVariant	GVFVariant.setScore(IntegerDt theValue) Sets the value(s) for score (Sequence score)
GVFVariant	GVFVariant.setSeqid(String theString) Sets the value for seqid (Sequence Id)
GVFVariant	GVFVariant.setSeqid(StringDt theValue) Sets the value(s) for seqid (Sequence Id)
GVFVariant	GVFVariant.setSequenceContext(GVFVariant.SequenceContext theValue) Sets the value(s) for sequenceContext (Context of features being described)
GVFVariant	GVFVariant.setSource(String theString) Sets the value for source (Data source)
GVFVariant	GVFVariant.setSource(StringDt theValue) Sets the value(s) for source (Data source)
GVFVariant	GVFVariant.setSourceFile(AttachmentDt theValue) Sets the value(s) for sourceFile (Source file)
GVFVariant	GVFVariant.setStart(int theInteger) Sets the value for start (Start position)
GVFVariant	GVFVariant.setStart(IntegerDt theValue) Sets the value(s) for start (Start position)
GVFVariant	GVFVariant.setStartRange(GVFVariant.StartRange theValue) Sets the value(s) for startRange (Start range)
GVFVariant	GVFVariant.setStrand(CodeDt theValue) Sets the value(s) for strand (Strand)
GVFVariant	GVFVariant.setStrand(String theCode) Sets the value for strand (Strand)
GVFVariant	GVFVariant.setSubject(GVFVariant.Subject theValue) Sets the value(s) for subject (Subject described by this segment of GVF file)
GVFVariant	GVFVariant.setType(CodeDt theValue) Sets the value(s) for type (Feature type)
GVFVariant	GVFVariant.setType(String theCode) Sets the value for type (Feature type)
GVFVariant	GVFVariant.setVariantAA(List<StringDt> theValue) Sets the value(s) for variantAA (Amino acids that overlap with the features being described)
GVFVariant	GVFVariant.setVariantCodon(List<StringDt> theValue) Sets the value(s) for variantCodon (Codons that overlap with feature being described)
GVFVariant	GVFVariant.setVariantEffect(List<GVFVariant.VariantEffect> theValue) Sets the value(s) for variantEffect (Variant effect)
GVFVariant	GVFVariant.setVariantFreq(List<DecimalDt> theValue) Sets the value(s) for variantFreq (Variant frequency)
GVFVariant	GVFVariant.setVariantSeq(List<StringDt> theValue) Sets the value(s) for variantSeq (Sequence presents in the variant)